Package name: (2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[(2R,3S,4R,6S)-2-(hydroxymethyl)-4,6-bis(oxidanyl)oxan-3-yl]oxy-oxane-3,4,5-triol

Package ID: 1255
Force-field: OPLS-AA | Code: Gromacs
Created by Bogdan Iorga (biorga)
Created at 2016-09-03 23:06:50
Modified at 2016-09-03 23:06:50

Abstract

The topology was generated using MOL2FF.

Chemical structure

General view

Detailed view

References

No citations associated with these parameters.

Reference validation values

These are experimental values or high-level quantum mechanics values, which will be used for comparison with computed values (found in individual versions).

Files and history

All deposited versions are available and can be downloaded individually. Higher version numbers are more recent. Files that changed between versions can be identified by differing SHA1 hash checksums.

Version 1 created at 2016-09-03

Score 1/5 "These parameters are not validated yet"

Computed validation values

grompp
preprocessor output "grompp-compatible"
Created at 2016-09-03 23:06:50 | Modified at 2016-09-03 23:06:50 | [download zip]
Type Description Hash (SHA1)
Topology DOM.itp 505d908a965974a140473fdb723e344b565d0abd
Structure DOM.pdb 93222027756234a03065c407bc40deb1812db613

Compound details

Ligand code DOM
Molecule identifier 7E3B92F87CACFAD8
Displayed name (2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[(2R,3S,4R,6S)-2-(hydroxymethyl)-4,6-bis(oxidanyl)oxan-3-yl]oxy-oxane-3,4,5-triol
Canonical IUPAC name (2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[(2R,3S,4R,6S)-2-(hydroxymethyl)-4,6-bis(oxidanyl)oxan-3-yl]oxy-oxane-3,4,5-triol
Formula C12H22O10
Molecular weight 326.30
Charge 0
Number of atoms 44
SMILES O2[C@H](O[C@H]1[C@H](O)C[C@H](O[C@@H]1CO)O)[C@H](O)[C@@H](O)[C@H](O)[C@H]2CO
PubChem CID 17753954
CAS RN
Other names

License

Type CC BY-SA – Creative Commons Attribution-Share Alike License
Name Bogdan I. Iorga
Email (hidden)
Source MOL2FF (http://mol2ff.icsn.cnrs-gif.fr)