Package name: (2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6S)-4,5,6-trihydroxy-2-(hydroxymethyl)oxan-3-yl]oxyoxane-3,4,5-triol

Package ID: 1737
Force-field: OPLS-AA | Code: Gromacs
Created by Bogdan Iorga (biorga)
Created at 2016-09-03 23:07:57
Modified at 2016-09-03 23:07:57

Abstract

The topology was generated using MOL2FF.

Chemical structure

General view

Detailed view

References

No citations associated with these parameters.

Reference validation values

These are experimental values or high-level quantum mechanics values, which will be used for comparison with computed values (found in individual versions).

Files and history

All deposited versions are available and can be downloaded individually. Higher version numbers are more recent. Files that changed between versions can be identified by differing SHA1 hash checksums.

Version 1 created at 2016-09-03

Score 1/5 "These parameters are not validated yet"

Computed validation values

grompp
preprocessor output "grompp-compatible"
Created at 2016-09-03 23:07:57 | Modified at 2016-10-29 12:07:07 | [download zip]
Type Description Hash (SHA1)
Topology LBT.itp 3c0785170988ac4d48cc3b232ccd37e0a9134fc1
Structure LBT.pdb c291c78e442e712abfeda12edf61fa8f3aaefa57

Compound details

Ligand code LBT
Molecule identifier BD7860C9FE52F616
Displayed name (2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6S)-4,5,6-trihydroxy-2-(hydroxymethyl)oxan-3-yl]oxyoxane-3,4,5-triol
Canonical IUPAC name (2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6S)-2-(hydroxymethyl)-4,5,6-tris(oxidanyl)oxan-3-yl]oxy-oxane-3,4,5-triol
Formula C12H22O11
Molecular weight 342.30
Charge 0
Number of atoms 45
SMILES O2[C@@H](O[C@H]1[C@H](O)[C@H]([C@H](O[C@@H]1CO)O)O)[C@H](O)[C@@H](O)[C@@H](O)[C@H]2CO
PubChem CID 84571
CAS RN 14641-93-1
Other names (2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6S)-4,5,6-trihydroxy-2-(hydroxymethyl)oxan-3-yl]oxyoxane-3,4,5-triol • (2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6S)-4,5,6-trihydroxy-2-(hydroxymethyl)tetrahydropyran-3-yl]oxy-tetrahydropyran-3,4,5-triol • (2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-[[(2R,3S,4R,5R,6S)-4,5,6-trihydroxy-2-(hydroxymethyl)-3-tetrahydropyranyl]oxy]tetrahydropyran-3,4,5-triol • (2R,3R,4S,5R,6S)-2-methylol-6-[(2R,3S,4R,5R,6S)-4,5,6-trihydroxy-2-methylol-tetrahydropyran-3-yl]oxy-tetrahydropyran-3,4,5-triol • (2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6S)-4,5,6-trihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-oxane-3,4,5-triol • 14641-93-1 • CHEBI:36219 • GLC-(4-1)GAL • beta-D-galactopyranosyl-(1->4)-alpha-D-glucopyranose • beta-D-galactopyranosyl-(1->4)-alpha-D-glucose • 4-O-beta-D-Galactopyranosyl-alpha-D-glucopyranose • EINECS 238-691-8 • alpha-D-Glucopyranose, 4-O-beta-D-galactopyranosyl- • Anhydrous lactose (JP15) • D00046 • Lactose, anhydrous (JAN/NF) • 1-beta-D-Galactopyranosyl-4-alpha-D-glucopyranose • Anhydrous lactose • C00243 • beta-D-Galp-(1->4)-alpha-D-Glcp • ZINC04095793

License

Type CC BY-SA – Creative Commons Attribution-Share Alike License
Name Bogdan I. Iorga
Email (hidden)
Source MOL2FF (http://mol2ff.icsn.cnrs-gif.fr)